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1

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Thompson, Julie D., Higgins, Desmond G., Gibson, Toby J.

Journal:

Nucleic Acids Research

Year:

1994

Language:

english

File:

PDF, 2.68 MB

english, 1994

2

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data

Ian B Jeffery, Desmond G Higgins, Aedín C Culhane

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 483 KB

english, 2006

3

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

Higgins, Desmond G., Sharp, Paul M.

Journal:

Year:

1988

Language:

english

File:

PDF, 736 KB

english, 1988

4

Sequence embedding for fast construction of guide trees for multiple sequence alignment

Gordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm, Desmond G Higgins

Journal:

Algorithms for Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.33 MB

english, 2010

5

A multivariate analysis approach to the integration of proteomic and gene expression data

Ailís Fagan, Aedín C. Culhane, Desmond G. Higgins

Journal:

Year:

2007

Language:

english

File:

PDF, 389 KB

english, 2007

6

Coelacanth's relationships

SHARP, PAUL M., LLOYD, ANDREW T., HIGGINS, DESMOND G.

Journal:

Year:

1991

File:

PDF, 247 KB

1991

7

T-coffee: a novel method for fast and accurate multiple sequence alignment

Cédric Notredame, Desmond G Higgins, Jaap Heringa

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 278 KB

english, 2000

8

[Methods in Enzymology] Computer Methods for Macromolecular Sequence Analysis Volume 266 || [22] Using CLUSTAL for multiple sequence alignments

Higgins, Desmond G

Year:

1996

Language:

english

File:

PDF, 1.07 MB

english, 1996

9

Improved sensitivity of profile searches through the use of sequence weights and gap excision

Thompson, Julie D., Higgins, Desmond G., Gibson, Toby J.

Journal:

Year:

1994

Language:

english

File:

PDF, 847 KB

english, 1994

10

A Cost-effective Method for Femoral Head Allograft Procurement for Spinal Arthrodesis

Brown, Desmond A., Mallory, Grant W., Higgins, Dominique M., Abdulaziz, Mohammed, Huddleston, Paul M., Nassr, Ahmad, Fogelson, Jeremy L., Clarke, Michelle J.

Journal:

Year:

2014

Language:

english

File:

PDF, 807 KB

english, 2014

11

OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity

Heringa, Jaap, Sommerfeldt, Hubert, Higgins, Desmond, Argos, Patrick

Journal:

Year:

1992

Language:

english

File:

PDF, 181 KB

english, 1992

12

Maternally and paternally silenced imprinted genes differ in their intron content

Marie E Fahey, Walter Mills, Desmond G Higgins, Tom Moore

Journal:

Comparative and Functional Genomics

Year:

2004

Language:

english

File:

PDF, 180 KB

english, 2004

13

mab21l2 transgenics reveal novel expression patterns of mab21l1 and mab21l2, and conserved promoter regulation without sequence conservation

Maria L. Cederlund, Victor Vendrell, Maria E. Morrissey, Jun Yin, Peadar Ó. Gaora, Vincent A. Smyth, Desmond G. Higgins, Breandán N. Kennedy

Journal:

Developmental Dynamics

Year:

2011

Language:

english

File:

PDF, 4.96 MB

english, 2011

14

CENP-F expression is associated with poor prognosis and chromosomal instability in patients with primary breast cancer

Sallyann L. O'Brien, Ailís Fagan, Edward J.P. Fox, Robert C. Millikan, Aedín C. Culhane, Donal J. Brennan, Amanda H. McCann, Shauna Hegarty, Siobhan Moyna, Michael J. Duffy, Desmond G. Higgins, Karin

Journal:

International Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 652 KB

english, 2007

15

The 2,3-epoxide, a donor in lanthanide shift-reagent studies of carbohydrate systems; the x-ray structure of methyl 2,3-anhydro-4,6-O-benzylidene-β-d-mannopyranoside

Desmond Cunningham, Noel Gavin, Elizabeth Lee, Patrick McArdle, John O'Callaghan, Timothy Higgins

Journal:

Carbohydrate Research

Year:

1988

Language:

english

File:

PDF, 584 KB

english, 1988

16

Transition-metal Schiff-base complexes as ligands in tin chemistry Part 6. Reactions of diorganotin(IV) dinitrates with M(3MeO-sal1,3pn) [M = Ni, Co or Zn; H23MeO-sal1,3pn = N,N′-bis(3-methoxysalicylidene)-propane-1,3-diamine]

Mary Boyce, Brenda Clarke, Desmond Cunningham, John F. Gallagher, Tim Higgins, Patrick McArdle, Máire NíCholchúin, Margaret O'Gara

Journal:

Journal of Organometallic Chemistry

Year:

1995

Language:

english

File:

PDF, 830 KB

english, 1995

17

Fast embedding methods for clustering tens of thousands of sequences

Gordon Blackshields, Mark Larkin, Iain M. Wallace, Andreas Wilm, Desmond G. Higgins

Journal:

Computational Biology and Chemistry

Year:

2008

Language:

english

File:

PDF, 527 KB

english, 2008

18

30-Day Readmissions After Coronary Artery Bypass Graft Surgery in New York State

Edward L. Hannan, Ye Zhong, Stephen J. Lahey, Alfred T. Culliford, Jeffrey P. Gold, Craig R. Smith, Robert S.D. Higgins, Desmond Jordan, Andrew Wechsler

Journal:

Journal of the American College of Cardiology: Cardiovascular Interventions

Year:

2011

Language:

english

File:

PDF, 305 KB

english, 2011

19

Transition-metal Schiff-base complexes as ligands in tin chemistry. Part 7. Reactions of organotin(IV) Lewis acids with [M(L)]2 [M=Ni, Cu and Zn; H2L=N,N′-bis(3-methoxysalicylidene)benzene-1,3-diamine and its -1,4-diamine analog]

Brenda Clarke, Nuala Clarke, Desmond Cunningham, Tim Higgins, Patrick McArdle, Máire Nı́ Cholchúin, Margaret O'Gara

Journal:

Journal of Organometallic Chemistry

Year:

1998

Language:

english

File:

PDF, 272 KB

english, 1998

20

Finding flexible patterns in unaligned protein sequences

Inge Jonassen, John F. Collins, Desmond G. Higgins

Journal:

Protein Science

Year:

1995

Language:

english

File:

PDF, 996 KB

english, 1995

21

The evolution of titin and related giant muscle proteins

Desmond G. Higgins, Siegfried Labeit, Mathias Gautel, Toby J. Gibson

Journal:

Journal of Molecular Evolution

Year:

1994

Language:

english

File:

PDF, 914 KB

english, 1994

22

Gene Expression, Intron Density, and Splice Site Strength inDrosophilaandCaenorhabditis

Marie E. Fahey, Desmond G. Higgins

Journal:

Journal of Molecular Evolution

Year:

2007

Language:

english

File:

PDF, 363 KB

english, 2007

23

Reactions of ditertiary phosphines with η6-arenetricarbonylmanganese cations

David A. Brown, W.Kenneth Glass, Khaled M. Kreddan, Desmond Cunningham, Patrick A. McArdle, Tim Higgins

Journal:

Journal of Organometallic Chemistry

Year:

1991

Language:

english

File:

PDF, 929 KB

english, 1991

24

The copper regulon of the human fungal pathogen Cryptococcus neoformans H99

Chen Ding, Jun Yin, Edgar Mauricio Medina Tovar, David A. Fitzpatrick, Desmond G. Higgins, Dennis J. Thiele

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

25

Temporal change in gene expression in the rat dentate gyrus following passive avoidance learning

Niamh C. O’Sullivan, Paul A. McGettigan, Graham K. Sheridan, Mark Pickering, Lisa Conboy, John J. O’Connor, Paul N. Moynagh, Desmond G. Higgins, Ciaran M. Regan, Keith J. Murphy

Journal:

Journal of Neurochemistry

Year:

2007

Language:

english

File:

PDF, 1.11 MB

english, 2007

26

Predictors of Postoperative Hematocrit and Association of Hematocrit with Adverse Outcomes for Coronary Artery Bypass Graft Surgery Patients with Cardiopulmonary Bypass

Edward L. Hannan, Zaza Samadashvili, Stephen J. Lahey, Alfred T. Culliford, Robert S. D. Higgins, Desmond Jordan, Jeffrey P. Gold, Craig R. Smith, Andrew Wechsler

Journal:

Journal of Cardiac Surgery

Year:

2010

Language:

english

File:

PDF, 98 KB

english, 2010

27

Malarial proteinase?

HIGGINS, DESMOND G., McCoNNELL, DAVID J., SHARP, PAUL M.

Journal:

Year:

1989

File:

PDF, 134 KB

1989

28

Long-Term Mortality of Coronary Artery Bypass Grafting and Bare-Metal Stenting

Chuntao Wu, Songyang Zhao, Andrew S. Wechsler, Stephen Lahey, Gary Walford, Alfred T. Culliford, Jeffrey P. Gold, Craig R. Smith, David R. Holmes Jr, Spencer B. King III, Robert S.D. Higgins, Desmond

Journal:

The Annals of Thoracic Surgery

Year:

2011

Language:

english

File:

PDF, 848 KB

english, 2011

29

P28: Advanced image analysis of immunohistochemistry on tumour specimens

Elton Rexhepaj, Donal J. Brennan, Karin Jirstrom, Åsa Kronblad, Ailís Fagan, Aedín C. Culhane, Robert C. Millikan, Göran Landberg, Michael J. Duffy, Lisa Rydén, Desmond G. Higgins, Sallyann L. O’Brien

Journal:

Experimental and Toxicologic Pathology

Year:

2009

Language:

english

File:

PDF, 59 KB

english, 2009

30

The relationship between perioperative temperature and adverse outcomes after off-pump coronary artery bypass graft surgery

Edward L. Hannan, Zaza Samadashvili, Andrew Wechsler, Desmond Jordan, Stephen J. Lahey, Alfred T. Culliford, Jeffrey P. Gold, Robert S.D. Higgins, Craig R. Smith

Journal:

The Journal of Thoracic and Cardiovascular Surgery

Year:

2010

Language:

english

File:

PDF, 148 KB

english, 2010

31

Multiple sequence alignments

Iain M Wallace, Gordon Blackshields, Desmond G Higgins

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 148 KB

english, 2005

32

Identification of novel inter-genotypic recombinants of human hepatitis B viruses by large-scale phylogenetic analysis

Weifeng Shi, Michael J. Carr, Linda Dunford, Chaodong Zhu, William W. Hall, Desmond G. Higgins

Journal:

Year:

2012

Language:

english

File:

PDF, 594 KB

english, 2012

33

Multiple sequence alignment with Clustal X

François Jeanmougin, Julie D. Thompson, Manolo Gouy, Desmond G. Higgins, Toby J. Gibson

Journal:

Trends in Biochemical Sciences

Year:

1998

Language:

english

File:

PDF, 578 KB

english, 1998

34

Detecting microRNA activity from gene expression data

Stephen F Madden, Susan B Carpenter, Ian B Jeffery, Harry Björkbacka, Katherine A Fitzgerald, Luke A O'Neill, Desmond G Higgins

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

35

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

Aedín C Culhane, Guy Perrière, Desmond G Higgins

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 500 KB

english, 2003

36

Supervised multivariate analysis of sequence groups to identify specificity determining residues

Iain M Wallace, Desmond G Higgins

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.11 MB

english, 2007

37

Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data

Jun Yin, Sarah McLoughlin, Ian B Jeffery, Antonino Glaviano, Breandan Kennedy, Desmond G Higgins

Journal:

Year:

2010

Language:

english

File:

PDF, 1.95 MB

english, 2010

38

Ensemble approach combining multiple methods improves human transcription start site prediction

David G Dineen, Markus Schröder, Desmond G Higgins, Pádraig Cunningham

Journal:

Year:

2010

Language:

english

File:

PDF, 266 KB

english, 2010

39

Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeastCandida parapsilosis

Alessandro Guida, Claudia Lindstädt, Sarah L Maguire, Chen Ding, Desmond G Higgins, Nicola J Corton, Matthew Berriman, Geraldine Butler

Journal:

Year:

2011

Language:

english

File:

PDF, 413 KB

english, 2011

40

Structural and functional properties of genes involved in human cancer

Simon J Furney, Desmond G Higgins, Christos A Ouzounis, Núria López-Bigas

Journal:

Year:

2006

Language:

english

File:

PDF, 866 KB

english, 2006

41

Co-regulation of Gremlin and Notch signalling in diabetic nephropathy

David W. Walsh, Sarah A. Roxburgh, Paul McGettigan, Celine C. Berthier, Desmond G. Higgins, Matthias Kretzler, Clemens D. Cohen, Sergio Mezzano, Derek P. Brazil, Finian Martin

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

Year:

2008

Language:

english

File:

PDF, 1.23 MB

english, 2008

42

3DCoffee: Combining Protein Sequences and Structures within Multiple Sequence Alignments

Orla O'Sullivan, Karsten Suhre, Chantal Abergel, Desmond G Higgins, Cédric Notredame

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 417 KB

english, 2004

43

A randomized, double-blind comparison of intravenous diltiazem and digoxin for atrial fibrillation after coronary artery bypass surgery

James E. Tisdale, I.Desmond Padhi, A.David Goldberg, Norman A. Silverman, Charles R. Webb, Robert S.D. Higgins, Gaetano Paone, Diane M. Frank, Steven Borzak

Journal:

American Heart Journal

Year:

1998

Language:

english

File:

PDF, 139 KB

english, 1998

44

Molecular evolution of immunoglobulin and fibronectin domains in titin and related muscle proteins

Paraic A. Kenny, Eibhlis M. Liston, Desmond G. Higgins

Journal:

Year:

1999

Language:

english

File:

PDF, 565 KB

english, 1999

45

The New York Risk Score for In-Hospital and 30-Day Mortality for Coronary Artery Bypass Graft Surgery

Edward L. Hannan, Louise Szypulski Farrell, Andrew Wechsler, Desmond Jordan, Stephen J. Lahey, Alfred T. Culliford, Jeffrey P. Gold, Robert S.D. Higgins, Craig R. Smith

Journal:

The Annals of Thoracic Surgery

Year:

2013

Language:

english

File:

PDF, 828 KB

english, 2013

46

X-ray crystal structure of the Desulfovibrio vulgaris (Hildenborough) apoflavodoxin-riboflavin complex

Martin A. Walsh, Andrew McCarthy, Paul A. O'Farrell, Patrick McArdle, P. Desmond Cunningham, Stephen G. Mayhew, Timothy M. Higgins

Journal:

Year:

1998

Language:

english

File:

PDF, 443 KB

english, 1998

47

Subgenotype reclassification of genotype B hepatitis B virus

Weifeng Shi, Chaodong Zhu, Wei Zheng, Michael J Carr, Desmond G Higgins, Zhong Zhang

Journal:

BMC Gastroenterology

Year:

2012

Language:

english

File:

PDF, 266 KB

english, 2012

48

Risk Score for Predicting In-Hospital/30-Day Mortality for Patients Undergoing Valve and Valve/Coronary Artery Bypass Graft Surgery

Hannan, Edward L., Racz, Michael, Culliford, Alfred T., Lahey, Stephen J., Wechsler, Andrew, Jordan, Desmond, Gold, Jeffrey P., Higgins, Robert S.D., Smith, Craig R.

Journal:

The Annals of Thoracic Surgery

Year:

2013

Language:

english

File:

PDF, 462 KB

english, 2013

49

Transition-metal Schiff-base complexes as ligands in tin chemistry. Part 3. An X-ray crystallographic and tin-119 M�ssbauer spectroscopic study of adduct formation between tin(IV) Lewis acids and nickel 3-methoxysalicylaldimine complexes

Cunningham, Desmond, Gallagher, John F., Higgins, Tim, McArdle, Patrick, McGinley, John, O'Gara, Margaret

Journal:

Journal of the Chemical Society Dalton Transactions

Year:

1993

Language:

english

File:

PDF, 975 KB

english, 1993

50

Using Illumina next generation sequencing technologies to sequence multigene families in de novo species

Hughes, Graham M., Gang, Li, Murphy, William J., Higgins, Desmond G., Teeling, Emma C.

Journal:

Molecular Ecology Resources

Year:

2013

Language:

english

File:

PDF, 599 KB

english, 2013